NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116165_1007232

Scaffold Ga0116165_1007232


Overview

Basic Information
Taxon OID3300009712 Open in IMG/M
Scaffold IDGa0116165_1007232 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6330
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088753Metagenome / Metatranscriptome109N
F105008Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0116165_10072324F088753GGTGGMTECGRILQELEMLKNTNDERLARRLSDWYGFVLSELTAGRVGDFIRSVPVDFVSLPFNGKRVENLINKCIKTLFEMAEDGRIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGRALPVVLHKETITEMILREAKLLALSKVAVAVKLYCRIPGKFYPAVCCLSSDCDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSWEELHMQIARAVAKIIEYEVATEFEKEKFARDDDDWVLEIR*
Ga0116165_10072327F105008N/AMTAIYDIAREEMMRNGDISLHMADGLFEAFSLIMQFKERVKFLPWYLLVLQETRKGRTGNFTTTVPFVWKKGDVFSVVRDILETLPQRCRTEEILGPVPVVSVPGCAVRDGYAHISRAGMFDLLFPDHDILFEIPCETGGIFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRENRDVFAELLRIDEEMLKIAMLERGTEISGIFSKIFPDCDWLETCDAGTVLNLDGRRYLVGKTPEEALTQGFLSCIRSVRDRLSDDGYLDIIR*
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