NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116166_1018532

Scaffold Ga0116166_1018532


Overview

Basic Information
Taxon OID3300009711 Open in IMG/M
Scaffold IDGa0116166_1018532 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3707
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088753Metagenome / Metatranscriptome109N
F105008Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0116166_10185322F088753GGTGGMTECGRILQELEMLKNTNDERLARRLSDWYGFVLSELTADRVGDFIRSVPVDFVSLPFNGKRVENLINKCIKTLFEMAEDGRIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGRALPVVLHKETITEMILREAKLLALSKVAVAVKLYCRIPGKFYPAVCCLSSDCDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSREELHMQIARAVAKIIEYEVATEFEKEKFARDDDDWVLEIR*
Ga0116166_10185325F105008N/AADGLFEAFSLIMQFKERVKFLPWYLLVLQETRKGRTGNFTTTVPFVWKKGDVFSVVRDILETLPQKCRTEEILGPVPVVSVPGCAVRDGYAHISRAGMFDLLFPDHDILFEIPCETGGIFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRENRDVFAELLRIDEEMLKIAMLERGTEISGIFSKIFPDCDWLETCDAGTVLNLDGRRYLVGKTPEEALTQGFLSCIRSVRDRLSDDGYLDIIR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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