NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0116192_1015978

Scaffold Ga0116192_1015978


Overview

Basic Information
Taxon OID3300009710 Open in IMG/M
Scaffold IDGa0116192_1015978 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3392
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F072892Metagenome121N
F076577Metagenome118N
F093482Metagenome106N
F096294Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0116192_10159781F093482AGGAGGVEERTLDGLWEKIEKENPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDW
Ga0116192_10159783F071725AGGAGGMNKLLLAKPESEYLGIGSLDQELSWVLNIYSNGKINDLIYDGLLLYAHDEEIKAIREKWQRKEINEVGLFHELEKLAKVESLPE*
Ga0116192_10159784F076577AGGAGGMFWPERKVIALMEIAFYFGAINYKPNNGKKRREAWEKFKSNCIDKRLKYINPDPRCAHPVNFDAIDYCWGYAEKTDKGEEINMNELCEGCEFFREEAKDEQVVTC*
Ga0116192_10159785F072892GGAGGMNINLLKTISTRLFGLYSQFKSIVSDLETNNTLDNQEWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIINAERNPMSEDEFCELFLKWAEENKLQFGGGLGAYREEEEDVLAGT*
Ga0116192_10159788F096294AGGAGGMSEEIPGKIGEFEDDNFMIELSGSTVKPTSTKHYKAFTQEQYESELKKAYFSGWEDRSDCELREIIHKRKSTREEYFKWFMEEKLKETCDD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.