Scaffold Ga0116192_1000020

Overview

Basic Information

• Taxon OID: 3300009710
• Scaffold ID: Ga0116192_1000020
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 135615
• Total Scaffold Genes: 176
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (16.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Hong Kong
• Coordinates
  • Lat. (^o): 22.28
  • Long. (^o): 114.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014380	Metagenome / Metatranscriptome	263	Y
F015602	Metagenome / Metatranscriptome	253	Y
F017300	Metagenome / Metatranscriptome	241	Y
F030766	Metagenome / Metatranscriptome	184	Y
F041189	Metagenome / Metatranscriptome	160	Y
F059904	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116192_100002011	F030766	N/A	MSLTYYAQKDALGFPIPGTMMGAQEVPPSSISIPAEDVIAGGGYQVVEHPEKLRYFVRKDKNGDIIPNSLIISLDKPQGLVYEFKLLKHV*
Ga0116192_1000020115	F014380	GGA	MALVNQVDKRVRMNLWDIVKYQLMTHCYLTKISVSEADLNCLTMLAISGEQELTQFCNNASKSAIFSSTQSVRNCLTKAEKKNLIKKEGKNKKKIYLNPELKIHAKGNILLDYKFLSVETNQS*
Ga0116192_1000020148	F059904	N/A	MANTTTRSKQPTDGKTASTTLKLPTYDCKLIIKVVDTVSGEAVKLYKKFKIKEDFGGEAEGAMISPNLGIYYLLVGKNYLTHNTLAHEIFHAAVRVTEDRGVTDEEAQAWLAGHITATIYKFLDKKKLTIKHG*
Ga0116192_10000203	F041189	N/A	MFSTKGQEVKTGGQTKSFQPGVVFAHIYGGQVRTSNKGDKKSLELTLEGPALEDFEGWAVDKNDQEGPKFKGLSARVSATIWTDQHNEPNVTKNEIMYKLAVIATELGLRDAIDSIQAVSLEDWVNQAISVLKGHDIYWFLKGTEEEYNGKTIVKLGLPKYKFVSANEAKLDKFDKNNKYHYRALENKSVTSFEPATNDFDMD*
Ga0116192_100002038	F015602	N/A	MSQHFTGKYIKKHGLLQPFSSALSKQMELFVSHVPEGSIVECFYEVQHDDGTLPQLAKLHVMIKQLSTHVGETVENMKLLVKDRAGLCIAREVAGKEYFLAKSFGECSKEELSLAIQAAIEIGNDVNCLLY*
Ga0116192_100002049	F017300	N/A	MYGKVKVTADENGNIIGRSQNNPEFGYIRVEQQVTQINQEGWLRRATRSALIKGRVDDLVAASFTAGQELPGKIVVRESFEPFNPQNPDRDLKMAGTTGVICRVGDQPIYRQSFYVTDDTASDELIMHDNREEIRQVQAVLRLTEKDTFKETPVATL*