NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116227_10002634

Scaffold Ga0116227_10002634


Overview

Basic Information
Taxon OID3300009709 Open in IMG/M
Scaffold IDGa0116227_10002634 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40541
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (46.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009583Metagenome / Metatranscriptome315Y
F012093Metagenome283Y
F057065Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0116227_1000263441F009583N/ALSSNSQTTVEKVALNSLKEIVPGLPLNFSILPEELLTSMVYMGVEVTTCNGVYGDGAKVGATIGVPH*
Ga0116227_1000263444F012093N/AVYTPLFSFQDLKLSTKDIIAILEDTLNTTSGLLPILDPHVTEVPSNTLERHSIGSRVADGIRNLVTSYNMAKLVGFPTSDFTFTYQKGVQNTSLVDLLLSKGVVDSHSFHKVSHSFPKVVPTEKTSIATGVAIIDNTGSTIQVGGHTPRVVLLDIGAQPVILGVQFAKKMGMLDSKLRKSMW*
Ga0116227_1000263445F057065N/AMAHHCMLKEAHTISYIQQVSHEWIEGNEEEIAYAQATKSLKVVPTDIQHGPVVVQRFKVAHKPLVKALSSFESMESHGEPIKPLLRQLITWTPPKEGITLLELFGGIGIGLETLLQSRMVV*

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