Scaffold Ga0116227_10000748

Overview

Basic Information

• Taxon OID: 3300009709
• Scaffold ID: Ga0116227_10000748
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66606
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (36.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003475	Metagenome	484	Y
F009583	Metagenome / Metatranscriptome	315	Y
F027081	Metagenome	195	Y
F086501	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116227_1000074842	F009583	N/A	LNSNSQTTIEKVALNSFKEIVLGFSLNFSILPKELLTSMLYMGVKVTACNGIYDDGVKVGAAIGVPH*
Ga0116227_1000074844	F027081	N/A	MNATFLPRISFVIIVGKRDIRKLFVLPSSQNESNSDYHGKICQHLPLSLNQKPRHLNLPLKLCPPKVIPIRMLRRRSTMLTRGRCFRPMQFKFRLYK*
Ga0116227_1000074845	F086501	N/A	MVKEYVLSIAHNSSLTPEFAIYFCPSYVAAQEANMAPRVSTSRQVIQINGLACSSSPITKARGVPTVMPQSFRPLNMEEEHTLLAKGEETTTLEAVRASNSRVLRVHVHQENTQFFIN*
Ga0116227_1000074851	F003475	GAGG	MGNTFPKLHQVNRITCNSGPNATHGRTITLSDAYHKVTKWFHHHMNGLVLFKRYTQSLDILELSVLIAFSLLITIGEVCVLKSETSLLGVNNVIE*