NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0116227_10000395

Scaffold Ga0116227_10000395


Overview

Basic Information
Taxon OID3300009709 Open in IMG/M
Scaffold IDGa0116227_10000395 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82983
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (28.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015050Metagenome257Y
F057837Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0116227_1000039527F015050GAGMKLTLPNLGLGNPPRLPKLQSSIAGVKTPCIGTLFISLESYQSVDVENGLAWAIWMSATHVMEKKKVRSQTSSLTPNH*
Ga0116227_100003958F057837N/AMQYVEKKFMEVYYNMLVQNHVHYNMLSQKITLWGGGASVKDLIPQCGGEEFKSSHLQPRLHWLLR*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.