Scaffold Ga0116195_1001551

Overview

Basic Information

• Taxon OID: 3300009707
• Scaffold ID: Ga0116195_1001551
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13547
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: China: Chengdu, Sichuan
• Coordinates
  • Lat. (^o): 30.66
  • Long. (^o): 104.06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088355	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116195_100155110	F088355	AGGAG	MKNLTNKANLFVGDKGQLVLAILTIALFVLAAGAPNATLGIGR*
Ga0116195_100155112	F088355	AGGAG	MKNTINNIRLFASHKGQLVLAILTIALFVLAAGAPNATLGIGR*
Ga0116195_100155113	F088355	AGGAG	MKSIINKINLFASHKGQLILAILTIALFVLAAGAPNATLGIGR*
Ga0116195_100155114	F088355	AGGAG	MKNTISLFVGRKGQLILAILTIALFVLAAGAPNATLGIGR*