Scaffold Ga0115002_10705968

Overview

Basic Information

• Taxon OID: 3300009706
• Scaffold ID: Ga0115002_10705968
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 712
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F029115	Metagenome / Metatranscriptome	189	N
F034715	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115002_107059681	F029115	GGGGG	VVDAITIRAILNYRHLTKGVEKMDTINTKKILDFTKLTGLTERITMSHGTLYVTLHQPERCDFFHGIIRTFYKDNINTDGGVNMYAVGDEFAFDFVPADREAPVFADEDEKGVWSEFAEE
Ga0115002_107059682	F000302	GGAGG	MVAVMSQDTKDRIEEMERQKIEMENQLELLGYSGNLVKMHQIEEEIYEIEDTIRKLLP*
Ga0115002_107059683	F034715	N/A	TEEKDWYCNDCEQGPKMDSDTNCSRCGTKHSSHQEEEMTGWEDEDIESEVEEIW*