Scaffold Ga0115002_10195833

Overview

Basic Information

• Taxon OID: 3300009706
• Scaffold ID: Ga0115002_10195833
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1573
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F007055	Metagenome / Metatranscriptome	359	Y
F008155	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115002_101958331	F005400	GGA	MTESPQLGKNHKGFKDLTHTNMTYRCDYCDQGYNQIFWLQQIAMEYFICDNCKEYYKLTLEGLQELKCVENRTEWQDAGWFPSKPFFPYPIGFDT*
Ga0115002_101958332	F008155	AGG	MKEHSQLASLVYIHAMRKQIEKEVESRYSKRIEYLVGANNELMNELEQCESEVVTIEKECYGRGA*
Ga0115002_101958336	F007055	N/A	MIWIAIVMTWNPVIYTIDKEFTSEVECWNYYDNGVGESDMRSRYGTQVLDHQGNKPDKEYMKKHRPSHRIYPTRLYKNFGAPLVWLTCDMRSRHEGL*