Basic Information | |
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Taxon OID | 3300009706 Open in IMG/M |
Scaffold ID | Ga0115002_10186141 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1623 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 190 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002078 | Metagenome / Metatranscriptome | 596 | Y |
F013820 | Metagenome / Metatranscriptome | 268 | Y |
F015741 | Metagenome / Metatranscriptome | 252 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115002_101861412 | F013820 | AGG | MKMVPTIVGLIDKLMPGGKTYALMGLGVLMTVCQMGGWHIFSQEAWGLLGIGGAATWKMGQDRK* |
Ga0115002_101861413 | F002078 | AGGAG | MDIGAMFEGQGWFAIAGQIVLIFTAVTGALPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQADVEKEIDEAKAKVRVRAGMPDVLDGM* |
Ga0115002_101861414 | F015741 | GAG | MFWTGCSFPLVELIPPVANFALGFYDHNDYYSKECLWYDEVRLNDDTKKWLLESNPPEIVSKDLSKVAKNNDLYKEVCKTDKGVADKLTSKASRVIDKTLMATGE* |
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