Scaffold Ga0115002_10139021

Overview

Basic Information

• Taxon OID: 3300009706
• Scaffold ID: Ga0115002_10139021
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1941
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F085730	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115002_101390214	F085730	N/A	MNYKEENWYNDIIDRLKDNEGMDQDDFYDVLHQEIDNMVIYNSESQRIVDDLNYDVFQEHDVYGRADNIGQAAYAALCDLFEEGDFTYEDYNELQEA*
Ga0115002_101390216	F019651	N/A	MTTLEKFQEEANIKFIQTPSRADIEIGELNTADGYELFYVTQDIQNLNYENELFYYRPDFDTIIAAILNAMIFGEEYVKVCVYDIEDWFDEYDMLNYLESEMDEESFEEFTNEEE*