Scaffold Ga0115002_10105031

Overview

Basic Information

• Taxon OID: 3300009706
• Scaffold ID: Ga0115002_10105031
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2304
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F029567	Metagenome / Metatranscriptome	188	Y
F035963	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115002_101050312	F035963	AGGA	LDKINEVVVAVSGAGLGLVLWICKRMFKSIDVAHERLDKLESKQVDRQYLENQLSPIRVDVNIILQHLLANKNREK*
Ga0115002_101050313	F002078	GGAG	MEMIMSQSWFQIAGEIVLMFTALTGAMPDRFVNKIPVLGKLWPIFNWLAGNVFNNVNHPKGMAALSEVEDELDKAKAEVRNRVKLPDVLDGV*
Ga0115002_101050314	F029567	N/A	MIAPVANFGIGLYDADSYYSKDCLWYEEIKFSAETKEWLRSINPPEQVIKDIAQVARNNDIFKKVCK*