NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115002_10088872

Scaffold Ga0115002_10088872


Overview

Basic Information
Taxon OID3300009706 Open in IMG/M
Scaffold IDGa0115002_10088872 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2553
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034345Metagenome / Metatranscriptome175Y
F087760Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0115002_100888726F087760AGGAGMNEIEILKRNVRDTQEQLQNSHIRIKKLKAKLMQNEKIITMLRKKP*
Ga0115002_100888727F034345GAGMTEDEQLLEFQHKLWELIRETSPPDESKVDILMVSGALLSTCLKLYVQTIGKESTIGMFNVAIESINYTKDSRILH*

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