Scaffold Ga0115002_10040705

Overview

Basic Information

• Taxon OID: 3300009706
• Scaffold ID: Ga0115002_10040705
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4172
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F024225	Metagenome	207	Y
F071255	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115002_100407051	F012639	AGGAG	MSSNNSGLVLNCTATYAIAAPAATVLSVTMQTSPTVAGVTELQVPLTENWIATDVYILAAAGAGGGVGATIIDPVVTMDKNRGRTLVQTPPLGAMLITSNTRPRFSPQPVGFEGGSIIRMFATSTVLNGAAVSNIQFSVAISIV*
Ga0115002_100407058	F071255	AGG	MSDNNNDESYMELDELSGKLKDGLSEEFNSIKGSINELSDKMNLTQKEKDGMTSVSEFVEHLDNCDNENCEIHKSINTKQNNFYMKGFLLGAKFGKQKRN*
Ga0115002_100407059	F024225	AGGAG	MIINFTTETIDRKLYEKSILTYIYDHYLYNDYRRLVEQDKWEINVRTLKDFNWNFYDKNIKNLSKKMPHGVTGNYTVDCYVSDETNRMYYLQNMMVICHELSHMLLKIYYPDTKGTLDKDDTYGKAGSVRNFFSTEIHNRVEQGKTRKFTTWHEREYYFYGIDIDDITNKRNLNNNI*