Scaffold Ga0115002_10011652

Overview

Basic Information

• Taxon OID: 3300009706
• Scaffold ID: Ga0115002_10011652
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9319
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038425	Metagenome	166	Y
F056907	Metagenome	137	N
F065114	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115002_1001165212	F038425	GGA	MDGEKSRVHCPKCDERMWWWGYSSSYTGDGSSELGLGCENNKCDGYEVLPEDVYDAVVIEEERIDA*
Ga0115002_1001165215	F065114	N/A	MNKQNLKLETPLLWGDSNAVMPSLGHGTGLLHRERETPESVSIEGLGCSGIAGAVVVPAHQTMNKHLMPSPLYLSLYNPESLMSIFGVSERTEVATGSAPKVASCVKQKTQRLTDLTGDRHEKE*
Ga0115002_100116523	F056907	N/A	MSGNAYYIPGDTGAGTKLPVGEYEATITALDVVDDVICGKFIADIFKPVYTVKHRDYPRADIKDNGIFRYKEKPGYSYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKFDTMDGFRVVIEVSYKNFVNESGNPVRYPVGTLKKKVGEVPF*