Scaffold Ga0115002_10002050

Overview

Basic Information

• Taxon OID: 3300009706
• Scaffold ID: Ga0115002_10002050
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26676
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (84.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F035963	Metagenome	171	Y
F067814	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115002_100020503	F067814	AGGAG	MPNKNTESKDKQKEKDKVARSVTSKAELKDVEIKNEILEQRTGAQTNGGLASTYTKIQLRNGTIKETYGERYGKPADSAK*
Ga0115002_1000205039	F002078	GGAG	MEMFMSQSWFQIVGEVVLMFTALTGAMPDRFVNKIPVLGKLWPIFNWLAGNVFNNVNHPKGMAALREVEDELDKAKAEVRDRVKLPDVLDGV*
Ga0115002_1000205041	F035963	GGA	VDKINEVVIAVSSGTLGVCLWICKRMFKSIDVAHERLDKLESKQVDRQYLENQLSPIRVDVNIILQHLLANKNREK*