NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115000_10309055

Scaffold Ga0115000_10309055


Overview

Basic Information
Taxon OID3300009705 Open in IMG/M
Scaffold IDGa0115000_10309055 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1021
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)58
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064728Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0115000_103090551F064728N/ATVTPEEITERMNQLDAKVPAPNYNEDTIPKRNYEIMFAQDFSGSSGNLQIDNNAVQFLQTATNSEAMVDTEEAPIEAEEKSMIMADLQLEDPVAQAPQAPVPPATGQVNAQNFQALFPNDATGAAIAQRGMKRG*

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