Scaffold Ga0115000_10010780

Overview

Basic Information

• Taxon OID: 3300009705
• Scaffold ID: Ga0115000_10010780
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6855
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_100107801	F006773	GGTGG	MNRVQTKTALPWKSGSKKEVDFYVEIGTTPYGKYGMYKEMIPVGTGSRGTHQAIADSVRLSNPDIFERFELRQIVSRG*
Ga0115000_100107802	F015360	N/A	MTKAKMDYLWAPKDEKLVSSLLDSLGFIKVGESRRYPTGVKYDALVAICDVISSQEKMASMVASRTHELQASRKATGKAPSIDSVVAALASGKMSEADLKKAMKLAGLI*
Ga0115000_100107805	F019253	AGGAG	MNPVEKFNKFMTQHTDKVPLLSVESTDDKRFTVLRAFLSSSFENVEDNAWSVSQNLGKFIDALSTMEPQDIRKITNTVRKYEVKGDNFGIRGEGKYGYDRSRVDRALIRRKRAN*