Scaffold Ga0115000_10004920

Overview

Basic Information

• Taxon OID: 3300009705
• Scaffold ID: Ga0115000_10004920
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10819
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F017844	Metagenome / Metatranscriptome	238	N
F053638	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_100049201	F017844	N/A	DTSDAEGYGYPRIGIQVAIPTEYSLSTIRSAGSPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*
Ga0115000_100049202	F016619	N/A	MAITIVHNADHKNLTGKTLSIQSELTSKLKTTIVDVTYGGSDNYATNGNTVDLSLGSRINTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSSTATVVALEELDASDTAVNSMTIRIRVIGF*
Ga0115000_100049208	F053638	N/A	MTLLPINITYNGKPTVIEFEDSLTFGDSETLIGNSVDLSDITKPKIDLPRYRLNLLALTVKNAPWKTGDINIIKIQDAKIIKSVLKEIVKVHPLTAYIEDWMETFMSSEDMTNLDMQSTTTVPANSGGTKKRSTTKK*