Scaffold Ga0115000_10000492

Overview

Basic Information

• Taxon OID: 3300009705
• Scaffold ID: Ga0115000_10000492
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36574
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (40.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y
F046008	Metagenome	152	Y
F054361	Metagenome	140	Y
F060349	Metagenome / Metatranscriptome	133	Y
F072850	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_1000049211	F005364	N/A	MDKLDLVNRIKGLVKEEVSSVLSERTYQYGGLLDPDEFDPIDPEIHIVGFGTMARSSLRKEIATRLEGALSTAKDASAGGPNSYDKYKSLEGVLEDKGVLMQQIKAEAEIANQLEQLRIKGGRRSIPIPKQF*
Ga0115000_100004922	F046008	N/A	MPKVLANVFAIAGKVVKRTYAIHGGLIPPYTMTLHGERYIMPGWYKMKRNEETPNIKDIAYYPYKAKKPNNLNIESNKVYKVKSSRGNSFYEVQLNVAGIVECSCPGYVFRRKCRHLAEFAQTSI*
Ga0115000_1000049220	F060349	N/A	MSKHQNKVLKQYPKAYAEHGMNGVRIISNDVFLAKEFYMPNTNDEDIAWEHAAMSCRLTQNFNRAHPSRMNLSDVESKLSRMHNRKRRGRRVK*
Ga0115000_1000049222	F054361	N/A	MGYVNNSAQHDEKKLKKYGKHYASIDFEINDSISEHYFENNEKPVVGKLIIGNSRFDVTYQEIDHMARTLHAAKDVINRKYKMGMMK*
Ga0115000_1000049224	F072850	AGG	MKLNELKIHEDDFDLFVALDAEDKIEFLFDATQVGLEEATIKQVGKLADRYAPITPAVSVQKYQVGPYRLCVTQYPNTIHLNSNSLRAIRKFISKLWNDGLILKQLKVAKTDFDVYRFLRVYEVIGKGQPFCNN*
Ga0115000_100004929	F007609	GAG	MITLENISTGDVINGEELEFFVDDDTAIGEVYVDGDLIFQALDVLNDHQLEHALHLEYKQVEDLEGILSEFNQF*