Scaffold Ga0114933_10456231

Overview

Basic Information

• Taxon OID: 3300009703
• Scaffold ID: Ga0114933_10456231
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 833
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4871
  • Depth (m): 495

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013822	Metagenome	268	Y
F019393	Metagenome	230	Y
F048575	Metagenome	148	N
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114933_104562311	F013822	N/A	RKNVRELQLQLRDAHIRIKELNEKCDELSKRLGLEKEFTTSDGWAMPVENPDATHIKERK
Ga0114933_104562312	F048575	AGGA	MATLQNSLILDEEYEYEVSVLDLWKVSGEEDPYSAIHLAMNTLRYPNPNVPDEEIEEHLSELWDERWSEYYV*
Ga0114933_104562313	F019393	GGAG	MYSELRTYTSIPEFIQAHEGLWHMLDAKYKKLDKETVLIDNTKWKLVKGNMTCLKK*
Ga0114933_104562314	F083382	GGA	MPEKIKDRDTLVSVDDAGDVAKKEYESYIKRQEKDVVDDLDNQYYSEGEQYE*