Scaffold Ga0114933_10269554

Overview

Basic Information

• Taxon OID: 3300009703
• Scaffold ID: Ga0114933_10269554
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4871
  • Depth (m): 495

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F021188	Metagenome	220	N
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114933_102695541	F021188	GAG	MTEELDIIWIPEGENKHVFIENTPDGETIPVDLPASTVDRLCKAKYGHTNWVRMGAVTVEELLHNPHVIDYLEGIIYFKNPRMV*
Ga0114933_102695543	F000720	GAGG	MTLIKENKNVRREIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLKELVDTLSQDNVVGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE*
Ga0114933_102695544	F030928	GGAG	MKKLWKELEKYTNFLILGFTIFICLIVIIVNSRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD*