Scaffold Ga0114933_10139809

Overview

Basic Information

• Taxon OID: 3300009703
• Scaffold ID: Ga0114933_10139809
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1674
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4871
  • Depth (m): 495

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F033113	Metagenome / Metatranscriptome	178	Y
F037814	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114933_101398092	F000896	AGGAG	MTNKINMVINLSILALLIYLAISVKKIEDKVFPDPNIMIPLIGNMDSKSELEYNIRTFLNNALSKAIEEQENQ*
Ga0114933_101398094	F000302	GGAGG	MVAVMSQDTKDRIADLERQKIELENRLEHLGYSGNLVRMHQIEEEIYEIEDTIRKLLP*
Ga0114933_101398095	F033113	AGGAG	MLKTIEKKIQSFVEGIGGIQRQEIVHGTLYVKLDNDRDCDFIHTEIRKFYKEFINPEGGVNMYAVGDEFAFDFVPTDRETPVFSDDEESLYGIWSEFAEEGLEKDMPDDVDTLLNLEEEMKRGK*
Ga0114933_101398096	F037814	AGGGGG	MEISLAISIVMLLVIIVSFTYMLKELKECQKIIKKMQKRSRKYIREVVSND*