Scaffold Ga0114933_10072593

Overview

Basic Information

• Taxon OID: 3300009703
• Scaffold ID: Ga0114933_10072593
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2462
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4871
  • Depth (m): 495

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065665	Metagenome	127	N
F067815	Metagenome	125	Y
F089018	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114933_100725931	F065665	AGGA	MKPIRSNELEFFKELIRDKFNDKERAVRSEIHMEADKLSQKNKASFPKACGVDKELKVLKKANDEYLNFIRSKSTVEAKL
Ga0114933_100725934	F089018	AGGA	MKINDERIKDWIEKCPEHDHELLHSDDNGIVMVVRFNNTEEEDEDQ*
Ga0114933_100725935	F067815	N/A	MKGGIIMMENTYSSFLVLRISEDKDNGKTEIVVVESFTTMVDAKKYKDAKDLIERLTPRFAWQHTQYKIQQVFYKSFVDVEKSA*