NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114933_10071581

Scaffold Ga0114933_10071581


Overview

Basic Information
Taxon OID3300009703 Open in IMG/M
Scaffold IDGa0114933_10071581 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2483
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4871Alt. (m)Depth (m)495
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F013311Metagenome / Metatranscriptome272Y
F024207Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0114933_100715811F024207N/ATQSRRNKARVRQLVNFMGIDGAAQFLSQATGQNVTGNDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRSAPRRASSTTLIKN*
Ga0114933_100715812F001611AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATSDTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGSYVNNDLLTTGSQRNRVLVRFTNDTGSQRTIRCGVFIGG*
Ga0114933_100715814F002374N/AMNEVLLYVSVFLASVSFFLCCYACARVGKLLNSVKGLDWDTIASLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYALKQQSNVHDINKKHIGG*
Ga0114933_100715815F013311AGGAGGLAFLGDFGKFFGLGSSEQVLGDAGAAVGSIFGPEYAIAGKELGKATGRATSNLSGDGNISPLSTADQALEQSAVPVSTINAPRPSETSNVGLTGTTMQAGFGSLLPSVIGAARSAFPQIGKFISTPTGAIATGVGTSVGVNMLTGNNMSMGKPVLTQSRRNKARVRQLVNFMGIDGAAQFLSQASGNNVTSGDVVQLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMARTRRSPTLRRASSTTLIKN*
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