Scaffold Ga0114933_10056916

Overview

Basic Information

• Taxon OID: 3300009703
• Scaffold ID: Ga0114933_10056916
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2840
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4871
  • Depth (m): 495

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008851	Metagenome / Metatranscriptome	327	Y
F015681	Metagenome / Metatranscriptome	253	Y
F023445	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114933_100569162	F023445	GGAG	MDEFFVQGVVGGVLNRHKNRTLDKNRIATLSVEIASNLDKASQYTDVIKEANLAKDNPLSIEMWKGWDGVERPYEKEYLDHWTCDICDEHTHEVDYDYLGSGTNHLKCELEHENAYNDYLDNTKSEQLEIQFPEDDNETS*
Ga0114933_100569163	F015681	GGAGG	MRHHKSEYENYILLSNQTKLLGGSYSRFLKFKTLMSSLNQMTQKQSNTYTYNGEHYVSSVTNAEVLKIQSAIDYGTYNSSIDKLKYIFNDIGDRLF*
Ga0114933_100569167	F008851	AGTAGG	MKKYKVIESYSSTEGTLYKGEVLKEDQNNTLDGHKRLRDSMGRVWFIPHKYIVRI*