Scaffold Ga0114933_10021906

Overview

Basic Information

• Taxon OID: 3300009703
• Scaffold ID: Ga0114933_10021906
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4977
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4871
  • Depth (m): 495

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034910	Metagenome	173	Y
F037683	Metagenome	167	Y
F038711	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114933_1002190611	F038711	N/A	MNEEMELVNDNGTWKIKWNDGFERSFESFFKAKLHFVALVNQQIAMER*
Ga0114933_100219064	F034910	GGAGG	MKRLYKVELNEIHCATFEVEATSEQDAVNEVLDGCGDLVHSEYSYTPDNDAVRSVTCKEDA*
Ga0114933_100219066	F037683	GGAGG	MEHDKVMIERIKLDVAEWMNTHGQVMCGEEISADVCNIIDESVERTKRIREDWMLPDRS*