Scaffold Ga0116217_10263145

Overview

Basic Information

• Taxon OID: 3300009700
• Scaffold ID: Ga0116217_10263145
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006905	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116217_102631451	F006905	N/A	ISNTMSPAAISAAIDALRAVLRDVPEEFPDRNREVNRFLAPLASAIHAIMKDQDIDIPFTSRVEHIATGGVAKYPDIVKMSLDELAAEFEGTCR*
Ga0116217_102631452	F001698	AGGAG	MAGVINDIEALAEFRAHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRLFGQALEEVTPGIAQYLSATEGHEAHLAALIERLGAYLETGAGAGLGVSRPETSRGTSRGTGRGTERRD*
Ga0116217_102631453	F002850	GGA	VTSIHADIDALKGLREALVRYRHAQREVAGRGEEEIKVVRASLEAKASRWRAQLEQCQAEFGACQERAAQAAAGSAADGPVAGEDPVDCSGYARAVEQCGERLEQIRRWQQRIDAEASEFQGTASRFGDLLENDLPRTEEHLLALIRSLE