NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116231_10012300

Scaffold Ga0116231_10012300


Overview

Basic Information
Taxon OID3300009697 Open in IMG/M
Scaffold IDGa0116231_10012300 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12658
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027081Metagenome195Y
F057064Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0116231_100123003F027081N/AMGKRDIRKLFVLPSSQKGSNSDYHNKIYQHLPLPLNQKPRHLNLPLKLPPPRVIIVRMLRRRSTMLIRGRCFKPMPFKFKLSKMNSNH*
Ga0116231_100123009F057064N/AMVQTCKKGLKNICLTKNKEDWDMALPYIAMGYRMSKHTSLSHFSPYYLLFGRHPIPPFSIVAQMDQVVDLDSPTTSAKVIVERTVLFKRVMPMAMQSLSIAQH*

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