NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116231_10007576

Scaffold Ga0116231_10007576


Overview

Basic Information
Taxon OID3300009697 Open in IMG/M
Scaffold IDGa0116231_10007576 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19743
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (40.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012093Metagenome283Y
F015049Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0116231_100075761F015049N/AMEVSSSSRIIKKFNGKPGTISLREFKATFLTVVCELELKYGTNYTEVFAFKQLARYVHYEALNVYKQHFSRILGVTQIPNPTYATAIAIAFQVALQTAIAHHGIVSNNLNLVPTSINFFPQQLIATTANIPPTIDALAFVDPMGEFFSNS*
Ga0116231_100075766F012093N/AMECQLQMREMAQKLVSTPLFSFQDLKLNTKDIIAVLKDTLNITSCLLPILDPHATWLPSNTLERHLISSCVTDGVRNLVTSFNMAKLMGSPTSDSTFTYQKGVKNISLMDMLFSKSVVDSHFLHKISHSFSKVVPSERTSIATRVAIVNNTKLTIQVGRHTPKVVLFDIGAQPMILGIQFTKKMGMFDSKLGKSMWQKFAPLVGVS*

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