NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116170_10091236

Scaffold Ga0116170_10091236


Overview

Basic Information
Taxon OID3300009694 Open in IMG/M
Scaffold IDGa0116170_10091236 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1955
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021528Metagenome / Metatranscriptome218N
F051104Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0116170_100912361F021528N/ALLQYNKAVLLQEVQQEISMIDTLKLMLNEYEITDNSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNADNWNLTLKPLPAGNRATGAFLQLSIPKNYYGSNFYSVGEEGTKAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETGGLPPTMRFEHRLLNKQKVQNVYGFGKVADLFHGGYAVVKEKQVESWESSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASFAGKEAVIEALKNAEAERTMVWRAVQKFEEAERELMVLKQEEGSKKTLGALYEELRRKVCLN*
Ga0116170_100912362F051104AGGAGLFELRIAEAITEEAVLSQDLIQEGFLHAFKAGELLQEVKSMLSSERDLEQWLEQNCSKVEKQVAFNCLKLFNGETVKVEATSKEQRNHKRERG*

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