Basic Information | |
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Taxon OID | 3300009694 Open in IMG/M |
Scaffold ID | Ga0116170_10032679 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3729 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Japan | |||||||
Coordinates | Lat. (o) | 35.92 | Long. (o) | 139.63 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F032312 | Metagenome / Metatranscriptome | 180 | N |
F060985 | Metagenome / Metatranscriptome | 132 | N |
F080163 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116170_100326793 | F080163 | N/A | MKTIKFLQESFETKERFQQEISFKYSYNRNTVESVDFRINQRNIKYFYEAMQNFENSLVDEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESKVLDSENEWIQEKLDLIREEICKLIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL* |
Ga0116170_100326795 | F060985 | GGA | MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHSTYFCSKEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD* |
Ga0116170_100326796 | F032312 | N/A | MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS* |
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