Scaffold Ga0116171_10682312

Overview

Basic Information

• Taxon OID: 3300009692
• Scaffold ID: Ga0116171_10682312
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 524
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 35.92
  • Long. (^o): 139.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073022	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116171_106823121	F073022	N/A	HRKLAADLRGDIPELPCLVFETTGRREEAMGFLTINQGRATVGSLDRYKAQLLAGDKTAFALETLVRGTGHRFGDKASARTVSCVQCLYNLAWEDRERLERLWPLLVELYPDAPMSDTVIKGLWAVDKWLAKAGRSVTEAPYREKLVAVGGMGLHREIRREVAVIGQGGVRISG