Scaffold Ga0116171_10000077

Overview

Basic Information

• Taxon OID: 3300009692
• Scaffold ID: Ga0116171_10000077
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92796
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (11.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 35.92
  • Long. (^o): 139.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078253	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116171_1000007745	F078253	N/A	METKIVYRIENPEDKDGMWYTKDGILRKKIHILCPDGIAKDFPMPFNPIHKKDGHIWQSAGKSAENMNQWFTASDAINLFNNGFKLFEFETTMFQELENEILFCLKGIVKQREIPLENVWDIASVIGRP*