Scaffold Ga0116171_10000014

Overview

Basic Information

• Taxon OID: 3300009692
• Scaffold ID: Ga0116171_10000014
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 184470
• Total Scaffold Genes: 297
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 194 (65.32%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 35.92
  • Long. (^o): 139.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F058120	Metagenome / Metatranscriptome	135	Y
F071209	Metagenome / Metatranscriptome	122	Y
F074429	Metagenome	119	Y
F078676	Metagenome / Metatranscriptome	116	Y
F089950	Metagenome / Metatranscriptome	108	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116171_10000014144	F097281	N/A	MNKATTPPVNLKEQNAAHTFRVTIRDRDHFYKLVNWLNTNVGKGEDKWTMEGRVLKTLKQGKTVAPKIYIFKEDFDPSSSLYLSLL*
Ga0116171_10000014152	F071209	N/A	MNELIREKEKSWTFTHINLPYAEIAKKGIVIWCVENLEGRWTMLGGNKFGFEDGTDATMFRMQFGLGI*
Ga0116171_10000014157	F055453	N/A	MKLKDIINESATDVVARFYKEASQEADKFYNPEDVKYKNLNKEYYEEHFKQWFSEEVVPVFTKPVTKPQPEFTNAPKEGKLQSPGYRGLNYALAAAGLPYNHKVQRYEPNATRMIASQTMDGARNNNGQ*
Ga0116171_10000014214	F078676	AGGA	MPRQIHGAATSMQNLTADLQYYVCYASSPGAFTNPNPNPPPSEELARLVNIQVTGSPLDQSQKNFEVFLMSIGLRAMPVVLTDPAPVLELADYTLELSGEGFIWKFAVERGVQFYNFTPYGTPGPVGLLIDDLNGVVIPSGVRITTVTGSPTGWNQNVAFSRMDSL*
Ga0116171_10000014241	F058120	AGGAG	MTTTATASEFGKTLLETIKSKDVLNTITQVQQYKENMRDVTVGADYVTWISEPVNLTLVHKALAEDLGVPPRVLAIRRAQMSRPQRAYLLVQAMELGIKKVHKL*
Ga0116171_10000014277	F089950	N/A	MASYFREGSNFSFNGIKGTIVKITETYRKNVLVIKVSELPKNNQFKGRKVETIGIFEYPDGTLEFMAVID*
Ga0116171_1000001435	F074429	GGAG	MAKKTTTSFNIDKAISRIAKPSVFDRIVKEIEAKEIPAKYIEQILVQYYDGNIVELSGNELTHPIPVNRNASWAVMEDSFKKMRDVKIFINTDRLEKDINEEVEKLLGNYC*