Scaffold Ga0116144_10025592

Overview

Basic Information

• Taxon OID: 3300009687
• Scaffold ID: Ga0116144_10025592
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3958
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium ADurb.Bin168 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.84
  • Long. (^o): -89.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064748	Metagenome / Metatranscriptome	128	Y
F078879	Metagenome / Metatranscriptome	116	N
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116144_100255927	F078879	AGG	MTPDVSDEVKEGYDLLEGIGIVERTESGQYYPTEVGAAIIYAVLCKQMFGTDADDFESEESQQVMMNRLEEMDLVEQGDESFIITIEGFTTFFTNLTYDCPYREEFLDWLALATAELAEEMEKL*
Ga0116144_100255928	F103501	N/A	VDYMIKNIVIEGVVSYDVEYDLWCVDEDFIENIISDFEDKKVLVTITVI*
Ga0116144_100255929	F064748	AGG	MKMYRFIGNMDDVTPCESMDAECIAVGCKGKTWGQCHFDPKLNLLSSGSEYYEEVRDTVFRVEKDKLFSSGGLYPLFDNKGKIWMKASHLKKHFEQSIGYNHETKQSIPLYKEYPYDAEVVEYALVEVKRTPVKKFVEGGE*