Scaffold Ga0116142_10172947

Overview

Basic Information

• Taxon OID: 3300009685
• Scaffold ID: Ga0116142_10172947
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1118
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.84
  • Long. (^o): -89.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071725	Metagenome	122	N
F072892	Metagenome	121	N
F076577	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116142_101729471	F072892	AGGAGG	MDINLLKTVSTRLFGLYSQFKSIVSDLETNNTLDNREWAKGLLSNLSTELYYEANCLTDVLYPPRKEEKDETMFKIDGIINAERNPMSEDEFFELFIKWAEENKLQFGGGIGAYREEEEDVLAGK*
Ga0116142_101729472	F076577	AGGAGG	MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVLDHCWGYAEKIDKGEEINMNELCEGCEFFKKEANNENPTQ*
Ga0116142_101729473	F071725	AGGAGG	MKTLLNKSESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFATDEEIKAIREKWQRKEINEVGLFHELEKLAKVESLPGWDE*