Scaffold Ga0116142_10010041

Overview

Basic Information

• Taxon OID: 3300009685
• Scaffold ID: Ga0116142_10010041
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7337
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.84
  • Long. (^o): -89.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037746	Metagenome / Metatranscriptome	167	N
F070633	Metagenome / Metatranscriptome	123	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116142_1001004111	F070633	AGGAG	VLDVLHSNSDDGFVYSVRQHLPLGPKRCKSDYNLVVVPLSDGIMTSIERETFNIAMDTEGRLILTRKDRKVQLVFDYDKGFMTGVLGGVLYDTFEVPRHEGTDYHG*
Ga0116142_100100417	F074119	GAGG	MSEIQVFEVLAKILPYLVSLGIGAFAGWELVKTKIHELAEFFNTVDEALYDDAVTEKEFRAIWEKGRILFQWSFAEKKGEA*
Ga0116142_100100419	F037746	GGAGG	MPVDIEWAKANDTVGQEFDANYIPGTTDKDLEDARALMEKLLKKYGSRDALEADERDWAKYKKAMYVVASRSKDTMDAANKTREGLIKRKNLLSKFWEENPDVLFGLSEWQRINIRKYTDLGLLIDQEYLWDLLSELGKEDTIKHLANVANYIYNDTGFLGGTREDYDALKRGPVRSIYLRPTCKSHKTISPSCGNGCSKKE*