NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114958_10498793

Scaffold Ga0114958_10498793


Overview

Basic Information
Taxon OID3300009684 Open in IMG/M
Scaffold IDGa0114958_10498793 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)585
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007110Metagenome / Metatranscriptome357Y
F007305Metagenome / Metatranscriptome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0114958_104987931F007110GGAGMNCVYCKNCVGVDRYEFLVETGRKIICKDCSVENRAVGFLSYSHKTAPELVMIPANNKEE
Ga0114958_104987932F007305N/ASAAFNGNKLICFTQNNPIKTHTGAYRIGEDFNLEKYKEYPYYHSESRLISKLLDKYNTIDSNWSVVVLRINRKGLILGSKPCENCDKLLDAVGLNTVYYSTDDGNFIDNVGNLIELNELTMPMVMV*

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