Scaffold Ga0116174_10024224

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116174_10024224

Scaffold Ga0116174_10024224

Overview

Basic Information
Taxon OID	3300009681 Open in IMG/M
Scaffold ID	Ga0116174_10024224 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3910
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	39.88	Long. (^o)	-75.22	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116174_100242246	F005744	AGGAG	MDDETFEIIKAGAPDGPPEQALYRIQQTYPDGSGGRLNVDWDGLLRLHELIHDRIALEGYVCETCDTKGCYRPATWEIECRGAGVSGCLIYSCDEHCPDPAILSPQDEIRRCA*

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