Scaffold Ga0115105_10554142

Overview

Basic Information

• Taxon OID: 3300009679
• Scaffold ID: Ga0115105_10554142
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2405
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 33.2898
  • Long. (^o): -129.427
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041432	Metagenome / Metatranscriptome	160	N
F051060	Metagenome / Metatranscriptome	144	Y
F065101	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115105_105541423	F065101	AGG	MNQIGTIKRIDQYERVYVPRQILEALGLEKSTEEKHGGHCVWVETDMGYMLKKANVDIEE
Ga0115105_105541426	F051060	GGTGG	MVETKSGTLLGKCAIDGQPIYDGSGFRSKYCTVSNGKWISGDTLLKLYQRTFEAFLAHNKDAEAEKALLLDRLEKYGWQTDPETGKLTKVLNRSGEME*
Ga0115105_105541427	F041432	GGAG	MAEQATELKLVGGLFRNKSKKGDVYYSGKGEDGTQYVLFRNAYWKEGEENKPYFRLHQKVPKGSSNTTMD*