Scaffold Ga0105252_10000726

Overview

Basic Information

• Taxon OID: 3300009678
• Scaffold ID: Ga0105252_10000726
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18366
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8898
  • Long. (^o): -106.9077
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F071164	Metagenome	122	Y
F094469	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105252_1000072614	F042051	AGGAG	MTTFGEVSWSDDVFPGGNDKKNTNNKDLFLRLEEGSNEMRLVTQPFQYLVHKVKKDANNPKDFGQKVSCSAIHGSCPCCDSGDKAKPRWLIGVISRKTGTYKILDISYAVFSQIRKYAKNVQRWGDPTKYDIDIVVDKNGGATGYYSVQAISKEPLSAADQMIKDSADLDDLKRRVTPLTPENVQKRLDKINGVADTAAPAAPAAGAKKAAPKATPKTTAVSMTDDEDLESSFPAYDATQAQS*
Ga0105252_1000072618	F036462	AGGA	MSQHVRLGDFLGNELEEDFANFDLTEIQQVLERLQNTDAIDLAHAELLQQQALRGADVITEYLGKIVKTVGYLETKVNSTKNAVSLAYQAPDGARTTADMKKWAGESAPVVEEVQIKLAKAKGSKLVLERKYEILVKSHHHFKDIAAGLRKTILGYSLGTTTTEKIPEGYE*
Ga0105252_1000072619	F042607	GAG	MAVRIIDNKKIDMTQDEWSMYQKIVKSYTTMTNRGDDLVIDLVESAEQGIIMFLKPCSTRQTSFEVYLFLMSLMQHQHLRQMHAQIDEVVAMLKEKLNSKK*
Ga0105252_100007263	F094469	AGTAG	MNKTALKKILEHPDKDEIIAKLVIGQPVKDVYDWLSSKYTNVSEMKFVVAEKSLKSFQENYLDIYTLIQDDLIKTKSAIANNTEQQLELAVHNNTAYKAIMIETANKQLDVRKTVAQLCVAIETRLSQVFDEIQEDPRNINTRVDRLLIEYTEVLGNILEKYYKFTEAPGDRIVQHNVTLQVVDQHITVFHDVIKRVLAQVDLETSMYFMEEFNKEMSKLKAPEKDAPPNVDMQLAEAKVLSETINKKLNE*
Ga0105252_100007264	F071164	GAGG	MRIAEMLYAIASWLESPNNEALLLSEADEHCMKVVAESCVLSAALLRQAADEVDSLEPPEESKITPHSIEGIANLAAALDSSGDPELKKQASVLDELLLTIAAPPHVFAARKDLEDRRIDELKKKYENPRKELAETHKFSETEKAIAKSNMTKQYKIMEAPLSTRYCPDHPGVQIARVGEHMWQCEMDKKSYNFETGFDLNNGDKVPGGDVAQQTQGLSVPTHAIFDTREGRLGNNQS*
Ga0105252_100007267	F038776	N/A	LQDIINISLSKIGHIAFTGDVMSKFSINYSSLENKIYKKAYRLADVKDQLESVAFDIVRFKDGDKGAELWQVQSADDGDYIVSLYQEDEEKTAALWEVAITKTAGELQVSYKGDPIVRVASSRLGIPRSELHKIPDYLPSKLAENKKLVTALLSEMPASAKNEVLKKYPELV*