NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105252_10000367

Scaffold Ga0105252_10000367


Overview

Basic Information
Taxon OID3300009678 Open in IMG/M
Scaffold IDGa0105252_10000367 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32979
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (77.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8898Long. (o)-106.9077Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023611Metagenome / Metatranscriptome209Y
F025043Metagenome / Metatranscriptome203Y
F026598Metagenome197Y
F096805Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0105252_1000036716F026598GAGMIEFSERDMNRGKVIDPAWYLVKIENIGEAPSKDGGSTNYPVEGVIIKNADNGDEKFAGTIIEWNFNSKAIGFAVGFLNALGVDVKAGARFDLANAIGHNVEVFIENGEWQGRIVNRVNHKYRTVRS*
Ga0105252_1000036729F023611AGGAGMPRIANRFHGPALVTNAAVTKFTVAAGELAIIRHIHVSNPSASAVDFTCSIGTDAAAVRIFDGYPIPADSVLDHFCYYVMTAAEFFQALAGTTNILTLTIDGERSVVG*
Ga0105252_1000036733F096805GGAGMPKGAAISEGSSGDNISHFAAIRIRVVGTGNLKMSVGCLGVRSKTLVPFVLQAINRMLMTRIVNFMETRAFFQIQTTEIDEYFRINRIVVFMKEKFTSYPGN*
Ga0105252_1000036739F025043N/AMDKSTVVSILPKVIMERKATIQPGIFELKKGSLENPAILVVGASSWWREVDIDQPLLEIPVSSIQIADSIVRDYCNGLLACNMADLMPGLFYLPGEFTVAKLKAEHEPLLKKAAANQKRWFLELVRIADILWSRSNGNPLAISEDARIACRELNITQKPWLGDLQTAELVRCIACGNLRNPQFPVCAVCKAIADPVKAKELNIVFAQ*
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