Scaffold Ga0115104_11117209

Overview

Basic Information

• Taxon OID: 3300009677
• Scaffold ID: Ga0115104_11117209
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1405
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.1275
  • Long. (^o): -123.299
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F032856	Metagenome / Metatranscriptome	179	N
F034391	Metagenome / Metatranscriptome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115104_111172091	F032856	AGG	MDEAKYRYWTKEYSDHLIEDVSDEMVLEYEEGVAGEVVNEFVVEEDYVMQLIEYWVDNYTMGNNKCKEIVDNLDYDIFEIDMEFGTRPDSWKQAGVWALDHAIHTDDNIQAIYKLTNEKLQELWKK*
Ga0115104_111172092	F034391	N/A	MTKYSQQYDNKLLEGILDHMANELKSEFGFSTLDEEDTLDVISLFVDNPDKYETAYLHSIETEDTEVVSSREKSNVEILQNLSNYTRYDG*
Ga0115104_111172093	F027054	N/A	MAPLKHSKRIGYYHGTHNLNQVRRTVQKRFDGGSGESVKSMFQFQGEYNDKPETSFYIAFSFYGGIETFKDDSGLEGEYMTFADRKILEDKLTILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFEDEYFYTFGYHKLSSFDKLHSGTTTHVTNTETVG*