Scaffold Ga0115104_10897142

Overview

Basic Information

• Taxon OID: 3300009677
• Scaffold ID: Ga0115104_10897142
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.1275
  • Long. (^o): -123.299
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031121	Metagenome / Metatranscriptome	183	Y
F031514	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115104_108971421	F031514	GGA	MYVDEWKGEPQKGELNEKFGLYVERPFHVVSQLPDNRYLDLINNRNMVIKTSNGRNTQEWYFHQQTLTIRTKYNNQSWDIKSSGKTKEM*
Ga0115104_108971422	F031121	AGGA	MQKVQVHPRHNGANQRWKVLYLDKKAKTETKGLNEEFGFHINRPFYIVSELPFNRVAEMHGNTQVTLRRWRNNTRQQQWWFDEVKKVVRNNYWKNYALDIQSNGGSNNLRTAGINSRWW*