Scaffold Ga0115104_10562447

Overview

Basic Information

• Taxon OID: 3300009677
• Scaffold ID: Ga0115104_10562447
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5257
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.1275
  • Long. (^o): -123.299
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F031121	Metagenome / Metatranscriptome	183	Y
F085742	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115104_105624471	F085742	N/A	STNSGWFQFFQFVGEQFVNPTNDKVLSVDGRKDEEGQGIIVDGNQKRLDQRWKVLYVDKAEKVRTKGFNKEFGFHINRPFYLRSRMPMQRVAECHGANNVWLKRWRKNVRQQQWFFDEVSKTLKNNYWKSHSLDI*
Ga0115104_1056244711	F031121	N/A	LNEEFGFHINRPFYLVSELPFNRVAEMLGGTNMVLKRWRNNQRQQQFWFDEVSKTVRNNYWKNYCWDIQGNGASNNFRTVSGINSRWW*
Ga0115104_1056244712	F001478	N/A	MIVNEKGKVVAVQGGLDNENRNLVMEPKNGKTHQRWRVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALPSGRYLDLINNRNMVQKIRNGRKTQIWYFHQQSLTIRTRYNNQSWDIKSAGR
Ga0115104_105624472	F001478	GGTGG	MFKYQDAFVVNEKGKVVEVQGNIDSENRNIMVSNKHGRINQQWDIVYADEWKGEPGKGEYNEKFGLYVERDFHVVSQLPANRYLDLPDNRNFVIKTSNGRKQQVWYFHQQSRTIRTRYNNQSWDIKSAGKTNNMQIWSTNSGWFQMFVYSQEHFCNI*
Ga0115104_105624473	F031121	N/A	MVSELPFNRVAEMLGGRNMVLKRWRNNQRQQQFWFDEVTKTLRNNYWKNYCLEIQSNGGSSNLWTNSAITSRWW*
Ga0115104_105624476	F085742	N/A	MQIWSTNSGWFQLFKFEKGQFINWTNNKVLDVSGAKDEEGQPVGVWTNSKATSQKWRVLYLDKAEKTETKGLNEEFGFHINRPFYIRSRLPMQRIAECHGANNVWLKRWRKNVAAQQWFFDEVSKTIKNNYWKSHSLDIQGNGSSSNARCTTTNSRWW*
Ga0115104_105624477	F001478	GGTGG	LFRRDGAFIRNIKNQKVLDVQGGVDGENKNIMWYPAHGKINQQWDIMYVDEWKGEPVKGELNERFGLYVERDFHVVSELPTHRYLDLINNRNMVQKVSNGRKTQVWYFHQQSLTIRTRYNNQSWDIQSSGRTKNMQIWSTNSGWF*
Ga0115104_105624478	F031121	N/A	MDKKDKTETKGLNEEFGFHINRPFYFVSQLPMNRVIEMLGGTNLVLKRWRKNQRQQQFWFDEVSKTIRNNYWKNYCIEIQGNGGSSNLRTYSGISSRWW*