Scaffold Ga0115104_10544989

Overview

Basic Information

• Taxon OID: 3300009677
• Scaffold ID: Ga0115104_10544989
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 841
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.1275
  • Long. (^o): -123.299
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020386	Metagenome / Metatranscriptome	224	Y
F071273	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115104_105449892	F020386	AGGA	MPISRNNFTSLPVAAELEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVEQAIMNQGINILATGPLGNSNTELTYMVRADSLDVANHITANGLRDAIRAVDTAGRAASATPRNTANFSAATVTAKTLAIAV*
Ga0115104_105449893	F071273	N/A	ADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINSFKSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA*