NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116215_1114588

Scaffold Ga0116215_1114588


Overview

Basic Information
Taxon OID3300009672 Open in IMG/M
Scaffold IDGa0116215_1114588 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001142Metagenome / Metatranscriptome766Y
F008260Metagenome / Metatranscriptome336Y
F027951Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0116215_11145881F027951AGGVTDGSRPALRAVDGTGPDDPVVRRRRFEAAHPQAVILPPAAGRWRAVLPAGVIPGDGTATTLGSWDLCGLMDQLEE
Ga0116215_11145882F001142AGGAGMMTGQAGSQPRGVFEVDEGRALAELELTWAGGGYHGFSADGGTWSAISSAGDVLTGDTPDALATSIRAHWQAMQ*
Ga0116215_11145884F008260GGAGGMGRAAASRVEGDGGALEELRFHWGEAYDIAIAGGMWTARRRDGRGGTLASPLPEGLLVLIRADYAAMPVPRDLP*
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