Scaffold Ga0123334_1006459

Overview

Basic Information

• Taxon OID: 3300009671
• Scaffold ID: Ga0123334_1006459
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10842
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031110	Metagenome / Metatranscriptome	183	Y
F064748	Metagenome / Metatranscriptome	128	Y
F090431	Metagenome / Metatranscriptome	108	N
F092110	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123334_10064591	F064748	AGG	MKKYRFIGNMEDVTPCGNMDEECIAVGCKGKVWGQCHFDPNLNLLSSGSEYYEEVRDTVFRVEKDGAYSNGGLYPFFSDNGKLWMKASHLKKHFEQSIGYNYETKQSIPLYKEYPYNAEVVEYALVEVKRTPVKKFVEGGE*
Ga0123334_100645915	F031110	N/A	MEFSDILKQLWHSSYSDALTDPKVHVFVGNSRHISVSPFYNSNCDMGFEDEKKLLQGKLRKINENLFKNFHLLCFTELKIVPKFKPGKIIIFNEYGDFVNEQHIRNIQKIINANPLTVFKVKTKQNVELKGNNVRMIKK*
Ga0123334_10064594	F090431	N/A	MINMRYIYSNRNLISVDSISLMEIFQDNIVLTLNSGRKLSVFSTKKSDDLEYVFIELSKEIRRDNCNIDMIEFRLYMKIYHGIEEGTWFL*
Ga0123334_10064597	F092110	N/A	MSCKDYIELKPGMEVKLSYEPWGYKNVDAVIDSVDVKYHYDEAHNCGVFHPVVVCYVGKYRMTFKGPINWETLVIKPCRKVYVKDLKVGDVIERGILRGFVKYVGEESATIQWFSKLGLKTFDNYYDKEIKYAEVVGHIDLWNL*